Most of these have been aswered above, but my answers:
OldSchoolRetroGamer, on Fri Dec 2, 2011 4:33 AM, said:
1. Can higher versions of Kickstart be loaded into an Amiga 1000 or is it only a specific version?
All versions of kickstart through 1.3 can be booted off of a floppy. As mentioned, there are 3rd party programs that will let you use extra RAM to softkick other versions.
Also, there's a vid out there (I don't think it's on youtube, my amiga.org or the German Amiga 1000 site??) of someone (I think his username was ratte) who took an Amiga 3.x kickstart ROM, removed things the A1000 didn't need, added a decompressor, compresses everything he could and kicked 3.x on an Amiga 1000. It was only a "for fun" demo tho, as my understanding was, it took AGES. The video was sped up..
OldSchoolRetroGamer, on Fri Dec 2, 2011 4:33 AM, said:
2. Is there any advantage to the 1000's ability to loading kickstart, like loading say a hacked or altered version of Kickstart?
Yes.
My favorite is "kickwork." Basically, a kickstart ROM is only 256k. The floppy is 800k. There's a lot of space left. So Piru at Amiga.org wrote a program that patches the trackdisk (floppy driver) to allow you to use the "rest of the space" on the disk as a WB floppy.
So, I put in my Kickwork disk, it "KICKS" to 1.3, then, instead of asking for the Workbench floppy, it just boots to Workbench 1.3.
Of course, you had to remove a lot of things on the Workbench disk, but you can run a fine Workbench in 500K.
BUT... That was before I got my sidecar Hard Disk. (it's a dual CF card actually) That requires a driver to be loaded. So...
I have a kickwork floppy that loads kickstart 1.3, then it loads the driver, then it "transfers" control to the hard disk and it continues to boot from there.
You could also probably "modify" the kickstart ROM to include the driver, but the kickwork disk made it much easier..
OldSchoolRetroGamer, on Fri Dec 2, 2011 4:33 AM, said:
3. Is there anything else that can be loaded into a 1000 instead of kickstart that would allow the 1000 to function different or even emulate a different machine.
As mentioned, yeah. Search for kicktos. (I think it's on youtube?) But, as far as I know, it was never "completed" and/or released in any fashion.
To bad, looked like a fun idea to play with...
As for games/apps for the Amiga, the only programs I am aware of that "used" kickstart RAM in anyway were Dragon's Lair (You needed a 1M Amiga (newer models) OR a 512k Amiga 1000 and it would use the kickstart space for memory) or A-Max, the Macintosh emulator (also by the same people who did Dragon's Lair) could use the kickstart area for Mac RAM.
OldSchoolRetroGamer, on Fri Dec 2, 2011 4:33 AM, said:
4. Can the 1000 be "upgraded" to a kickstart in ROM?
Yeah, there's someone who still makes those (djbase on EAB). I've considered it, but you have to do just a "bit" of soldering and trace cutting. Nothing difficult, but combing that with the fact that I like kicking from floppy..
OldSchoolRetroGamer, on Fri Dec 2, 2011 4:33 AM, said:
Also, any other plus or minus opinions on the 1000 compared to later Amiga's?
-The only "real" issue is Agnus CHIP. You only get 512k CHIP RAM and no PAL. If you want to work with graphics/etc, it can be limiting and the only way around it is a super rare motherboard swapout to a 3rd party motherboard (which is no longer really an Amiga 1000....) My Amiga 500 (with the 512k expansion), I can cut one trace and add one bit of solder, and I have 1M CHIP. I add an addon (DKB minimegaCHIP which is generally found pretty easily) and I get 2M of CHIP if needed.
Of course, I never played PAL games on my Amiga 500 in PAL back in the day and I didn't mind much. There was still plenty.

-Yeah, the super early Amigas didn't have EHB, but very little actually uses it. (Black Crypt comes to mind) and it's easy to swap out a DENISE chip.
My only issue is that my Amiga 1000 is pretty beat up. (I got it that way)
It mostly works, but my A-Max (which works on my Amiga 500) doesn't work.. I suspect the 12v line. Also, the RCA audio plugs need to be replaced. One of them only works with a piece of plastic stuffed under it.. (As I said, it had a hard life before I got it..)
If/when I got it fixed up, it will replace my A500 as my main "retro" Amiga. I don't need PAL (I can use my Amiga 1200 with WHDLOAD for that) I don't need more CHIP RAM, again, my A1200 is my more "productive" machine so it's the one that could use more CHIP RAM..
It's (IMHO) the nicest looking of all the Amigas....
desiv